Updates
May 27, 2010 RSEM v0.6 is online now. In the read file, a read can be distributed in multiple lines (see fasta format), but no extra space is allowed.
April 26, 2010 RSEM v0.5 is updated.
April 16, 2010 RSEM v0.5 is online now. Some bugs are fixed. EM_double & EM_RSPD can deal with 0 unalignable reads now.
March 25, 2010 RSEM v0.4 is online now. Add option to change executable programs' path in "runPipeLine.cpp".
March 22, 2010 Mouse reference data we used are ready to download.
February 12, 2010 RSEM v0.3 is online now.
November 23, 2009 RSEM v0.2 is online now.
August 27, 2009 RSEM v0.1 is online now.
Author
RSEM is mainly developed by Bo Li, who is a member of Deweylab.License
RSEM is under the GNU General Public License.
Download
Documents
Mouse Reference Data (mm9)
Estimation on mouse liver data
Format is as follows:
clusterId nu/tau standard_error
clusterId is defined in UCSC Genome Browser's mouse knownIsoforms table
Acknowledgements
RSEM was developed with the help of Prof. Colin Dewey.
(last modified on May 27, 2010)